A marmoset brain cell census reveals regional specialization of cellular identities

Fenna M. Krienen, Kirsten M. Levandowski, Heather Zaniewski, Ricardo C.H. del Rosario, Margaret E. Schroeder, Melissa Goldman, Martin Wienisch, Alyssa Lutservitz, Victoria F. Beja-Glasser, Cindy Chen, Qiangge Zhang, Ken Y. Chan, Katelyn X. Li, Jitendra Sharma, Dana McCormack, Tay Won Shin, Andrew Harrahill, Eric Nyase, Gagandeep Mudhar, Abigail Mauermann, Alec Wysoker, James Nemesh, Seva Kashin, Josselyn Vergara, Gabriele Chelini, Jordane Dimidschstein, Sabina Berretta, Benjamin E. Deverman, Ed Boyden, Steven A. McCarroll, and Guoping Feng
 
Science Advances・12 Oct 2023 Vol 9, Issue 41
DOI: 10.1126/sciadv.adk3986

 

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Implicit Neural Representations for Joint Decomposition and Registration of Gene Expression Images in the Marmoset Brain

Michal Byra, Charissa Poon, Tomomi Shimogori & Henrik Skibbe
 
Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 pp 645–654
Conference paper | First Online: 01 October 2023
DOI: 10.1007/978-3-031-43999-5_61

 

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Thalamocortical control of cell-type specificity drives circuits for processing whisker-related information in mouse barrel cortex

Timothy R Young, Mariko Yamamoto, Satomi S Kikuchi, Aya C Yoshida, Takaya Abe, Kenichi Inoue, Joshua P Johansen, Andrea Benucci, Yumiko Yoshimura , Tomomi Shimogori
 
Nat Commun.2023 Sep 28;14(1):6077
PMID: 37770450 DOI: 10.1038/s41467-023-41749-x

 

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An automated pipeline to create an atlas of in situ hybridization gene expression data in the adult marmoset brain

Charissa Poon, Muhammad Febrian Rachmadi, Michal Byra, Matthias Schlachter, Binbin Xu, Tomomi Shimogori, Henrik Skibbe
 
Subjects:Computer Vision and Pattern Recognition (cs.CV)
Mon, 13 Mar 2023 05:02:34 UTC
DOI:10.48550/arXiv.2303.06857″

 

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Transcriptomic architecture of nuclei in the marmoset CNS

Jing-Ping Lin, Hannah M. Kelly, Yeajin Song, Riki Kawaguchi, Daniel H. Geschwind, Steven Jacobson & Daniel S. Reich

Nature Communications volume 13, Article number: 5531 (2022) DOI:10.1038/s41467-022-33140-z

 

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Conservation of the Direct and Indirect Pathway Dichotomy in Mouse Caudal Striatum With Uneven Distribution of Dopamine Receptor D1- and D2-Expressing Neurons

Kumiko Ogata, Fuko Kadono,Yasuharu Hirai, Ken-ichi Inoue, Masahiko Takada, Fuyuki Karube, and Fumino Fujiyama
Front. Neuroanat., 04 February 2022 DOI: 10.3389/fnana.2022.809446

 

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Role of an Atypical Cadherin Gene, Cdh23 in Prepulse Inhibition, and Implication of CDH23 in Schizophrenia

Shabeesh Balan, Tetsuo Ohnishi, Akiko Watanabe, Hisako Ohba, Yoshimi Iwayama, Manabu Toyoshima, Tomonori Hara, Yasuko Hisano, Yuki Miyasaka, Tomoko Toyota, Chie Shimamoto-Mitsuyama, Motoko Maekawa, Shusuke Numata, Tetsuro Ohmori, Tomomi Shimogori, Yoshiaki Kikkawa, Takeshi Hayashi, and Takeo Yoshikawa

Schizophr Bull. 2021 Jul; 47(4): 1190–1200. Published online 2021 Feb 17. DOI: 10.1093/schbul/sbab007

 

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The distribution of Cdh20mRNA demarcates somatotopic subregions and subpopulations of spiny projection neurons in the rat dorsolateral striatum

Masanori Takahashi, Ryoji Fukabori, Hiroshi Kawasaki, Kazuto Kobayashi, Kiyoshi Kawakami

J Comp Neurol. 2021 Jul 9 PMID: 34240415 DOI: 10.1002/cne.25215

 

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Spatial Transcriptomics: Molecular Maps of the Mammalian Brain

Cantin Ortiz, Marie Carlén, and Konstantinos Meletis

Annual Review of Neuroscience. Vol.44:547-562 (Volume publication date July 2021). DOI: 10.1146/annurev-neuro-100520-082639

 

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Molecular cell identities in the mediodorsal thalamus of infant mice and marmoset

Kohei Onishi, Satomi S Kikuchi, Takaya Abe, Tomoko Tokuhara, Tomomi Shimogori

J Comp Neurol. 2021 Jun 29. PMID: 34184265 DOI:10.1002/cne.25203.

 

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